Aspergillus Genomics - Aspergillus nidulans

  1. Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae. Nature. 2005 Dec 22;438(7071):1105-15. Galagan JE et.al.

    Supplementary genomic material

    1. Detailed Methods: A. nidulans Sequencing and Assembly.
    2. Aspergillus Phylogenetic Analysis - Raw Data (Excel file)
    3. Synteny Analysis
    4. Upstream open reading frames (uORFs) (Excel file)
    5. Conserved Non-Coding conpats (Excel file)
    6. Transposable Elements
    7. Assembly and Genetic Map Integration
    8. Peroxisomes. Table §S8.1 Enzymes involved in fatty acid beta-oxidation in Aspergillus species
    9. Hyphal Growth. Table §S9.1. Rho GTPases in Aspergillus fumigatus, Aspergillus nidulans and Aspergillus oryzae.
    10. Gene Prediction Protocol and Accuracy Estimation
    11. Genes Implicated In Sexual Reproduction in Fungi
    12. Two Predicted TPP Riboswitches
    13. Aspergillus nidulans Comparative Map


  2. The Aspergillus nidulans Genome Database at The Broad Institute

  3. TIGR Aspergillus nidulans Gene Index

    The TIGR Aspergillus nidulans Gene Index integrates research data from international Aspergillus nidulans EST sequencing and gene research projects. The goal of the project is to represent a non-redundant view of all Aspergillus nidulans genes and data on their expression patterns, cellular roles, functions, and evolutionary relationships.

  4. The Cereon Microbial Sequence Database Website

    This site provides access to proprietary genome sequence data for Aspergillus nidulans for researchers at academic and non-profit institutions.

  5. Aspergillus Genomics website (Nancy Keller, Misawa, Rolf Prade and Bruce Roe)

    This site contains the Aspergillus nidulans chromosome IV sequence database, the A. nidulans EST database and the A. nidulans physical maps.

  6. The Aspergillus nidulans Linkage Map at the University of Glasgow (John Clutterbuck)

    Linkage Data, Maps, Locus Lists, Strain list and Annual Bibliographies

  7. Fungal Cosmid and cDNA Sequencing at Oklahoma University (Bruce Roe)

    This site contains the sequence of cosmids from Aspergillus nidulans, A. parasiticus and Neurospora crassa. It contains A. nidulans and N. crassa EST databases which are searchable using Blast.

  8. Database of Genomes and Transcriptional Regulation for Filamentous Fungi at the NIBH, Japan (Masayuki Machida)

    This site contains the Aspergillus oryzae EST database and the sequence of a single A. nidulans cosmid SW06H01.

  9. Fungal Genome Resource at the University of Georgia (Jonathan Arnold)

    This site contains physical maps of Aspergillus nidulans, Neurospora crassa, Nectria haematococca and Pneumocystis carinii. It contains databases of N. crassa and P. carinii cosmid end sequence and P. carinii ESTs which are searchable using Blast.

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