The following genomes are hosted at CADRE and we have added biosynthetic pathways for Asp. fumigatus.
The Af293 genome has been mapped to a metabolic pathway database (Tuckwell et.al., 2010) and there are now multiple Aspergillus species mapped to their Metabolic pathways at Aspercyc.
Researchers can also access the following genomes at the following organisations:
Individual genome search: go to CADRE-Genomes
Other Search Tools and Resources:
|BLAST search||Genes of medical interest|
General Aspergillus Resources (With thanks to AspGD)
Aspergillus Genetic Information
Aspergillus home page at the Fungal Genetics Stock Center (FGSC).
The Aspergillus nidulans Linkage Map
John Clutterbuck's web site at the University of Glasgow, with A. nidulans linkage data and maps, gene lists and functional information, strain information, and references
Aspergillus Comparative Database
Genome sequence, annotation, and tools at the Broad Institute; includes A. fumigatus, A. flavus, A. nidulans, A. niger, A. terreus, A. oryzae, N. fischeri, A. clavatus.
Aspergillus nidulans Sequence Data at NCBI
Sequence traces deposited at NCBI's trace archive for:
Aspergillus nidulans. Data also available by FTP from NCBI.
Aspergillus flavus. Data also available by FTP from NCBI.
Aspergillus fumigatus. Data also available by FTP from NCBI.
Aspergillus niger ATCC 1015. Data also available by FTP from NCBI.
Aspergillus terreus. Data also available by FTP from NCBI.
Aspergillus terreus ATCC 32359. Data also available by FTP from NCBI.
Neosartorya fischeri NRRL 1. Data also available by FTP from NCBI.
Aspergillus nidulans Gene Knock-Out Cassettes from the FGSC
The Fungal Genetic Stock Center (FGSC) can provide DNA suitable for transformation or amplification. A spreadsheet listing the cassettes and primers is available for download, and more information is available on the FGSC web site.
Aspergillus fumigatus Genome Project at the Sanger Institute
Sequencing and annotation of the A. fumigatus genome, performed at the Sanger Institute.
Aspergillus fumigatus GeneDB
Gene and gene product information for A. fumigatus, hosted by the Sanger Institute.
CADRE Aspergillus Metabolic Pathway Database
View and search metabolic pathways for several Aspergillus species, provided by CADRE and the Aspergillus Website. Pathways were predicted usingPathway Tools software, and some have been manually edited.
Aspergillus Genome Project at JCVI
Sequencing and automated annotation of A. terreus, Neosartorya fischeri, and A. clavatus at the J. Craig Venter Institute (JCVI).
Aspergillus niger Genome Project at JGI
Sequence and annotation of the A. niger genome, performed at the DOE Joint Genome Institute (JGI).
Aspergillus oryzae Genome Project at NITE
Sequence and annotation of the A. oryzae genome, performed at the National Institute of Technology and Evaluation (NITE), Japan.
Cosmid and cDNA sequencing
Aspergillus nidulans, Aspergillus parasiticus, and Neurospora crassa data, available for searching and download from the University of Oklahoma.
Gene Index Project
A. nidulans and A. flavus EST and gene information from the Computational Biology and Functional Genomics Laboratory at the Dana-Farber Cancer Institute and Harvard School of Public Health
Aspergillus Genome Resources
Aspergillus information gateway page at the National Center for Biotechnology Information (NCBI).